PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096952.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 518aa    MW: 56568.1 Da    PI: 4.6775
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096952.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35381292102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_010096952.1  38 FLSKTYDMVDDPATDPVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRS 123
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010096952.1 124 INRRKP 129
                     ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3931121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-3633127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-6434127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDGISNGGDV QSSGGEGSQP AVAAVPAPIQ NANAPPPFLS KTYDMVDDPA TDPVVSWSPT  60
NNSFVVWNPP EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL  120
LRSINRRKPA HGHSHQQPQS SHSQSSVGPC VEVGKFGLEE EVERLKRDKN VLMQELVRLR  180
QQQQTTDNQL QAMVQRLQGM EQRQQQMMSF LAKAVQSPGF LAQFVQQQNE SNRRITEANK  240
KRRLKQDGIA ESEISAASDG QIVKYQPMMN EAAAKAMLRQ IMKAEASSGL DSYKNNPDGF  300
LIGDGSSSST SVENRSPSSR VSGVRLQEVL PTSGQRSCVS ASSGISIPAA AISEIQSAPE  360
SLTSEKVTTA PFPDVSVLVG AQEGPTIPIS RGDVVMPELS QLSEMVPEGI LSSPEDNFMV  420
TESDDGLFDP TSFGVNGSIP LDIDIDSIPA DHDIDELLKD SAFLDELLVQ SPAPEQSSPD  480
GTSKEIEVQQ KENGWSKTQH MDKLTEQMGL LVSDAKGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-273612718120Heat shock factor protein 1
5d5u_B2e-273612727129Heat shock factor protein 1
5d5v_B2e-273612727129Heat shock factor protein 1
5d5v_D2e-273612727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238245NKKRRLKQ
2239244KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096952.10.0Heat shock factor protein HSF8
SwissprotQ401521e-179HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLW9RBE80.0W9RBE8_9R
STRINGPOPTR_0003s09370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-128heat shock transcription factor A1D